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Improve error message for unrecognized arguments
enhancementNew feature or requestNew feature or requestStatus: Open.#2028 In nextstrain/augur;docs: Fix numpy types for Python 3.12
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#2017 In nextstrain/augur;- Status: Open.#2013 In nextstrain/augur;
[export] Allow warning text in auspice-config JSON
enhancementNew feature or requestNew feature or requestStatus: Open.#2012 In nextstrain/augur;- Status: Open.#2010 In nextstrain/augur;
Config based Augur commands
enhancementNew feature or requestNew feature or requestStatus: Open.#1987 In nextstrain/augur;Augur proximity follow-ups
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#1985 In nextstrain/augur;[refine] ? allow substitution model selection
enhancementNew feature or requestNew feature or requestStatus: Open.#1982 In nextstrain/augur;is there a way to give protein sites non-sequential numbering?
enhancementNew feature or requestNew feature or requestStatus: Open.#1968 In nextstrain/augur;multiple inputs: include source attribution
enhancementNew feature or requestNew feature or requestStatus: Open.#1965 In nextstrain/augur;filter: Remove deprecated
--outputand-ooptionsbreakingMakes a backwards incompatible change and should wait for major releaseMakes a backwards incompatible change and should wait for major releaseStatus: Open.#1949 In nextstrain/augur;Unhelpful error message from treetime when
augur ancestralfails to load translation alignmentbugSomething isn't workingSomething isn't workingenhancementNew feature or requestNew feature or requesttreetimeUpstream issue with treetimeUpstream issue with treetimeStatus: Open.#1919 In nextstrain/augur;