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Naturalis Biodiversity Center

33 followers
Leiden, the Netherlands
https://www.naturalis.nl

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barcode-constrained-phylogeny barcode-constrained-phylogeny Public

Pipeline for building topologically-constrained phylogenies from DNA barcode data

Python 2 3

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All C Dockerfile HTML Java JavaScript Jupyter Notebook OpenEdge ABL Perl PHP Puppet Python R Shell Terra TeX Web Ontology Language

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Showing 10 of 185 repositories

sdmdl Public
Species Distribution Modelling using Deep Learning

naturalis/sdmdl's past year of commit activity

Python 29 MIT 12 4 10 Updated Jul 18, 2026
aviti_genome_skim_24032 Public
Mitogenome assembly quality analysis for Naturalis AVITI run 20260428_AV250703_24032-5021000_28_04_2026

naturalis/aviti_genome_skim_24032's past year of commit activity

HTML 0 0 0 0 Updated Jul 8, 2026
galaxy-tool-BLAST Public
A new tool and wrapper for the identification with blastn

naturalis/galaxy-tool-BLAST's past year of commit activity

Python 0 2 2 1 Updated Jun 19, 2026
DWCAConfig Public
DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

naturalis/DWCAConfig's past year of commit activity

Shell 1 2 1 0 Updated Jun 8, 2026
barcode_validator Public
Standardized validation of DNA barcodes

naturalis/barcode_validator's past year of commit activity

Python 2 Apache-2.0 7 7 0 Updated May 27, 2026
galaxy-tool-edentity-metabarcoding-pipeline Public

naturalis/galaxy-tool-edentity-metabarcoding-pipeline's past year of commit activity

Python 1 Apache-2.0 0 0 2 Updated May 22, 2026
BGE_data_processing_skimming Public
BGE sample download, checksum, sample-range, plate-split; prep for MGE

naturalis/BGE_data_processing_skimming's past year of commit activity

Shell 0 GPL-3.0 0 0 0 Updated Apr 30, 2026
galaxy-tool-lca Public

naturalis/galaxy-tool-lca's past year of commit activity

Python 3 3 1 1 Updated Apr 21, 2026
BGE_relations_ENA Public
Assess parent-child project hierarchies in ENA

naturalis/BGE_relations_ENA's past year of commit activity

HTML 0 GPL-3.0 0 0 0 Updated Apr 14, 2026
mycodiversity Public
Pipelines for analyzing fungal diversity

naturalis/mycodiversity's past year of commit activity

Python 1 MIT 1 0 3 Updated Apr 3, 2026

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