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1. ecotyper ecotyper Public

   EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

   R 246 45

2. cytospace cytospace Public

   CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data

   Python 151 20

3. cytotrace2 cytotrace2 Public

   CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.

   R 261 24

4. spatialecotyper spatialecotyper Public

   Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data

   R 33 3